J3_9AXU_004

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CGAUAGCGAACAAGUAG*CGAAAG*CUUG

Length

27 nucleotides

Bulged bases

9AXU|1|2|U|351, 9AXU|1|2|A|359, 9AXU|1|4|U|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|C|348
9AXU|1|2|G|349
9AXU|1|2|A|350
9AXU|1|2|U|351
9AXU|1|2|A|352
9AXU|1|2|G|353
9AXU|1|2|C|354
9AXU|1|2|G|355
9AXU|1|2|A|356
9AXU|1|2|A|357
9AXU|1|2|C|358
9AXU|1|2|A|359
9AXU|1|2|A|360
9AXU|1|2|G|361
9AXU|1|2|U|362
9AXU|1|2|A|363
9AXU|1|2|G|364
*
9AXU|1|2|C|371
9AXU|1|2|G|372
9AXU|1|2|A|373
9AXU|1|2|A|374
9AXU|1|2|A|375
9AXU|1|2|G|376
*
9AXU|1|4|C|29
9AXU|1|4|U|30
9AXU|1|4|U|31
9AXU|1|4|G|32

Current chains

Chain 2

28S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL4A

Chain k

Large ribosomal subunit protein uL24

Chain v

Large ribosomal subunit protein eL37B

Chain x

Large ribosomal subunit protein eL39