J3_9AXU_007

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AGUCUUACCUGG*UGUGGUAGGU*ACAUAAU

Length

29 nucleotides

Bulged bases

9AXU|1|2|U|500, 9AXU|1|2|U|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AXU|1|2|A|444
9AXU|1|2|G|445
9AXU|1|2|U|446
9AXU|1|2|C|447
9AXU|1|2|U|448
9AXU|1|2|U|449
9AXU|1|2|A|450
9AXU|1|2|C|451
9AXU|1|2|C|452
9AXU|1|2|U|453
9AXU|1|2|G|454
9AXU|1|2|G|455
*
9AXU|1|2|U|498
9AXU|1|2|G|499
9AXU|1|2|U|500
9AXU|1|2|G|501
9AXU|1|2|G|502
9AXU|1|2|U|503
9AXU|1|2|A|504
9AXU|1|2|G|505
9AXU|1|2|G|506
9AXU|1|2|U|507
*
9AXU|1|2|A|642
9AXU|1|2|C|643
9AXU|1|2|A|644
9AXU|1|2|U|645
9AXU|1|2|A|646
9AXU|1|2|A|647
9AXU|1|2|U|648

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein eL6

Chain q

Large ribosomal subunit protein eL32A

Chain r

Large ribosomal subunit protein eL33A

Chain y

Large ribosomal subunit protein eL28