J3_9AXU_010

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UAG*CGUAG*UCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9AXU|1|2|U|861
9AXU|1|2|A|862
9AXU|1|2|G|863
*
9AXU|1|2|C|895
9AXU|1|2|G|896
9AXU|1|2|U|897
9AXU|1|2|A|898
9AXU|1|2|G|899
*
9AXU|1|2|U|924
9AXU|1|2|C|925
9AXU|1|2|A|926
9AXU|1|2|A|927

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL2C

Chain d

Large ribosomal subunit protein eL19B

Chain s

Large ribosomal subunit protein eL34B