J3_9AXU_013

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9AXU|1|2|A|1516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9AXU|1|2|U|1513
9AXU|1|2|G|1514
9AXU|1|2|A|1515
9AXU|1|2|A|1516
9AXU|1|2|G|1517
9AXU|1|2|U|1518
9AXU|1|2|G|1519
*
9AXU|1|2|C|1912
9AXU|1|2|A|1913
9AXU|1|2|A|1914
*
9AXU|1|2|U|1926
9AXU|1|2|C|1927
9AXU|1|2|U|1928
9AXU|1|2|A|1929

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein eL19B

Chain s

Large ribosomal subunit protein eL34B