J3_9AXU_015

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UCGAUC*GGAAU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

9AXU|1|2|U|1560
9AXU|1|2|C|1561
9AXU|1|2|G|1562
9AXU|1|2|A|1563
9AXU|1|2|U|1564
9AXU|1|2|C|1565
*
9AXU|1|2|G|1626
9AXU|1|2|G|1627
9AXU|1|2|A|1628
9AXU|1|2|A|1629
9AXU|1|2|U|1630
*
9AXU|1|2|A|1647
9AXU|1|2|A|1648

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain j

Large ribosomal subunit protein uL23A

Chain s

Large ribosomal subunit protein eL34B

Chain w

Large ribosomal subunit protein eL38A

Chain x

Large ribosomal subunit protein eL39