J3_9AXU_016

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AGAUAG*CGUAUGAAAGUUGCACG*CGUGCCUCCUAU

Length

35 nucleotides

Bulged bases

9AXU|1|2|G|1590, 9AXU|1|2|A|1592, 9AXU|1|2|C|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AXU|1|2|A|1571
9AXU|1|2|G|1572
9AXU|1|2|A|1573
9AXU|1|2|U|1574
9AXU|1|2|A|1575
9AXU|1|2|G|1576
*
9AXU|1|2|C|1585
9AXU|1|2|G|1586
9AXU|1|2|U|1587
9AXU|1|2|A|1588
9AXU|1|2|U|1589
9AXU|1|2|G|1590
9AXU|1|2|A|1591
9AXU|1|2|A|1592
9AXU|1|2|A|1593
9AXU|1|2|G|1594
9AXU|1|2|U|1595
9AXU|1|2|U|1596
9AXU|1|2|G|1597
9AXU|1|2|C|1598
9AXU|1|2|A|1599
9AXU|1|2|C|1600
9AXU|1|2|G|1601
*
9AXU|1|2|C|1608
9AXU|1|2|G|1609
9AXU|1|2|U|1610
9AXU|1|2|G|1611
9AXU|1|2|C|1612
9AXU|1|2|C|1613
9AXU|1|2|U|1614
9AXU|1|2|C|1615
9AXU|1|2|C|1616
9AXU|1|2|U|1617
9AXU|1|2|A|1618
9AXU|1|2|U|1619

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain N

Large ribosomal subunit protein uL2C

Chain T

Large ribosomal subunit protein eL8

Chain Z

Large ribosomal subunit protein eL15B

Chain j

Large ribosomal subunit protein uL23A

Chain v

Large ribosomal subunit protein eL37B