J3_9AXU_020

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AAUUGG*CAUAUUCUAGCGUUAAAG*CUGAU

Length

29 nucleotides

Bulged bases

9AXU|1|2|A|2643, 9AXU|1|2|U|2644, 9AXU|1|2|A|2645, 9AXU|1|2|U|2646, 9AXU|1|2|U|2647, 9AXU|1|2|U|2649, 9AXU|1|2|A|2650

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AXU|1|2|A|2625
9AXU|1|2|A|2626
9AXU|1|2|U|2627
9AXU|1|2|U|2628
9AXU|1|2|G|2629
9AXU|1|2|G|2630
*
9AXU|1|2|C|2642
9AXU|1|2|A|2643
9AXU|1|2|U|2644
9AXU|1|2|A|2645
9AXU|1|2|U|2646
9AXU|1|2|U|2647
9AXU|1|2|C|2648
9AXU|1|2|U|2649
9AXU|1|2|A|2650
9AXU|1|2|G|2651
9AXU|1|2|C|2652
9AXU|1|2|G|2653
9AXU|1|2|U|2654
9AXU|1|2|U|2655
9AXU|1|2|A|2656
9AXU|1|2|A|2657
9AXU|1|2|A|2658
9AXU|1|2|G|2659
*
9AXU|1|2|C|2672
9AXU|1|2|U|2673
9AXU|1|2|G|2674
9AXU|1|2|A|2675
9AXU|1|2|U|2676

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein eL43A

Chain N

Large ribosomal subunit protein uL2C

Chain T

Large ribosomal subunit protein eL8

Chain j

Large ribosomal subunit protein uL23A

Chain l

Large ribosomal subunit protein eL27A

Chain o

Large ribosomal subunit protein eL30A

Chain s

Large ribosomal subunit protein eL34B