J3_9AXU_021

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

9AXU|1|2|C|2892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.1

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9AXU|1|2|G|2746
9AXU|1|2|U|2747
9AXU|1|2|C|2748
*
9AXU|1|2|G|2849
9AXU|1|2|C|2850
9AXU|1|2|C|2851
9AXU|1|2|U|2852
9AXU|1|2|A|2853
9AXU|1|2|U|2854
9AXU|1|2|C|2855
9AXU|1|2|G|2856
9AXU|1|2|A|2857
9AXU|1|2|U|2858
9AXU|1|2|C|2859
9AXU|1|2|C|2860
*
9AXU|1|2|G|2888
9AXU|1|2|G|2889
9AXU|1|2|U|2890
9AXU|1|2|G|2891
9AXU|1|2|C|2892
9AXU|1|2|C|2893

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein eL42

Chain c

Large ribosomal subunit protein eL18B

Chain f

Large ribosomal subunit protein eL21B

Chain m

Large ribosomal subunit protein uL15B