J3_9AXU_022

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

9AXU|1|2|A|2798, 9AXU|1|2|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05327.1

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|C|2759
9AXU|1|2|U|2760
9AXU|1|2|C|2761
*
9AXU|1|2|G|2785
9AXU|1|2|A|2786
9AXU|1|2|A|2787
*
9AXU|1|2|U|2796
9AXU|1|2|A|2797
9AXU|1|2|A|2798
9AXU|1|2|A|2799
9AXU|1|2|A|2800
9AXU|1|2|G|2801

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein uL18B

Chain W

Large ribosomal subunit protein uL5A

Chain f

Large ribosomal subunit protein eL21B