J3_9AXU_023

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9AXU|1|2|A|2982, 9AXU|1|2|U|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9AXU|1|2|U|2981
9AXU|1|2|A|2982
9AXU|1|2|U|2983
9AXU|1|2|C|2984
*
9AXU|1|2|G|3009
9AXU|1|2|U|3010
9AXU|1|2|U|3011
*
9AXU|1|2|A|3025
9AXU|1|2|C|3026
9AXU|1|2|U|3027
9AXU|1|2|A|3028
9AXU|1|2|A|3029
9AXU|1|2|U|3030
9AXU|1|2|A|3031

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL3A

Chain a

Large ribosomal subunit protein uL13A

Chain h

Large ribosomal subunit protein uL14B