J3_9AXU_024

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGAUUUAUAUG*CGUAGAAGA*UGAAAUUCCAUUGAAAUCUUG

Length

41 nucleotides

Bulged bases

9AXU|1|2|U|3268, 9AXU|1|2|A|3315, 9AXU|1|2|G|3316, 9AXU|1|2|G|3319, 9AXU|1|2|A|3368, 9AXU|1|2|U|3370, 9AXU|1|2|C|3372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AXU|1|2|U|3261
9AXU|1|2|G|3262
9AXU|1|2|A|3263
9AXU|1|2|U|3264
9AXU|1|2|U|3265
9AXU|1|2|U|3266
9AXU|1|2|A|3267
9AXU|1|2|U|3268
9AXU|1|2|A|3269
9AXU|1|2|U|3270
9AXU|1|2|G|3271
*
9AXU|1|2|C|3312
9AXU|1|2|G|3313
9AXU|1|2|U|3314
9AXU|1|2|A|3315
9AXU|1|2|G|3316
9AXU|1|2|A|3317
9AXU|1|2|A|3318
9AXU|1|2|G|3319
9AXU|1|2|A|3320
*
9AXU|1|2|U|3365
9AXU|1|2|G|3366
9AXU|1|2|A|3367
9AXU|1|2|A|3368
9AXU|1|2|A|3369
9AXU|1|2|U|3370
9AXU|1|2|U|3371
9AXU|1|2|C|3372
9AXU|1|2|C|3373
9AXU|1|2|A|3374
9AXU|1|2|U|3375
9AXU|1|2|U|3376
9AXU|1|2|G|3377
9AXU|1|2|A|3378
9AXU|1|2|A|3379
9AXU|1|2|A|3380
9AXU|1|2|U|3381
9AXU|1|2|C|3382
9AXU|1|2|U|3383
9AXU|1|2|U|3384
9AXU|1|2|G|3385

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein eL6

Chain Y

Large ribosomal subunit protein eL14

Chain a

Large ribosomal subunit protein uL13A

Chain r

Large ribosomal subunit protein eL33A