J3_9AXU_026

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

9AXU|1|3|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_26985.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

7

Unit IDs

9AXU|1|3|C|9
9AXU|1|3|C|10
9AXU|1|3|A|11
9AXU|1|3|U|12
9AXU|1|3|A|13
9AXU|1|3|C|14
*
9AXU|1|3|G|65
9AXU|1|3|G|66
*
9AXU|1|3|U|109
9AXU|1|3|G|110

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain Q

Large ribosomal subunit protein uL18B

Chain V

Large ribosomal subunit protein uL16A

Chain W

Large ribosomal subunit protein uL5A

Chain f

Large ribosomal subunit protein eL21B