J3_9AXU_027
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9AXU|1|4|U|68, 9AXU|1|4|C|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9AXU|1|4|A|52
9AXU|1|4|C|53
*
9AXU|1|4|G|66
9AXU|1|4|A|67
9AXU|1|4|U|68
9AXU|1|4|A|69
9AXU|1|4|C|70
9AXU|1|4|G|71
9AXU|1|4|U|72
*
9AXU|1|4|A|104
9AXU|1|4|A|105
9AXU|1|4|U|106
9AXU|1|4|C|107
9AXU|1|4|U|108
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain j
- Large ribosomal subunit protein uL23A
- Chain t
- Large ribosomal subunit protein uL29
- Chain v
- Large ribosomal subunit protein eL37B
- Chain x
- Large ribosomal subunit protein eL39
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