J3_9AZC_007

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9AZC|1|L5|G|959, 9AZC|1|L5|G|965, 9AZC|1|L5|C|967, 9AZC|1|L5|C|968, 9AZC|1|L5|C|969, 9AZC|1|L5|U|971, 9AZC|1|L5|C|1280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|712
9AZC|1|L5|C|713
*
9AZC|1|L5|G|955
9AZC|1|L5|A|956
9AZC|1|L5|G|957
9AZC|1|L5|G|958
9AZC|1|L5|G|959
9AZC|1|L5|A|960
9AZC|1|L5|G|961
9AZC|1|L5|C|962
9AZC|1|L5|G|963
9AZC|1|L5|A|964
9AZC|1|L5|G|965
9AZC|1|L5|A|966
9AZC|1|L5|C|967
9AZC|1|L5|C|968
9AZC|1|L5|C|969
9AZC|1|L5|G|970
9AZC|1|L5|U|971
9AZC|1|L5|C|972
9AZC|1|L5|G|973
9AZC|1|L5|C|974
9AZC|1|L5|C|975
9AZC|1|L5|G|976
*
9AZC|1|L5|C|1278
9AZC|1|L5|A|1279
9AZC|1|L5|C|1280
9AZC|1|L5|G|1281
9AZC|1|L5|G|1282
9AZC|1|L5|G|1283
9AZC|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32