J3_9AZC_016

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9AZC|1|L5|U|2763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|A|2551
9AZC|1|L5|G|2552
9AZC|1|L5|A|2553
9AZC|1|L5|U|2554
9AZC|1|L5|G|2555
*
9AZC|1|L5|C|2572
9AZC|1|L5|A|2573
9AZC|1|L5|G|2574
9AZC|1|L5|U|2575
*
9AZC|1|L5|A|2757
9AZC|1|L5|G|2758
9AZC|1|L5|G|2759
9AZC|1|L5|G|2760
9AZC|1|L5|U|2761
9AZC|1|L5|G|2762
9AZC|1|L5|U|2763
9AZC|1|L5|A|2764
9AZC|1|L5|A|2765
9AZC|1|L5|A|2766
9AZC|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27