J3_9AZC_024

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9AZC|1|L5|U|4882, 9AZC|1|L5|A|4938, 9AZC|1|L5|C|4940, 9AZC|1|L5|A|4943, 9AZC|1|L5|C|4944

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|G|4751
9AZC|1|L5|U|4752
9AZC|1|L5|U|4753
9AZC|1|L5|G|4754
*
9AZC|1|L5|C|4879
9AZC|1|L5|C|4880
9AZC|1|L5|U|4881
9AZC|1|L5|U|4882
9AZC|1|L5|C|4883
*
9AZC|1|L5|G|4936
9AZC|1|L5|C|4937
9AZC|1|L5|A|4938
9AZC|1|L5|C|4939
9AZC|1|L5|C|4940
9AZC|1|L5|G|4941
9AZC|1|L5|C|4942
9AZC|1|L5|A|4943
9AZC|1|L5|C|4944
9AZC|1|L5|G|4945
9AZC|1|L5|U|4946
9AZC|1|L5|U|4947
9AZC|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a