J3_9AZM_006

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

9AZM|1|S2|A|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9AZM_006 not in the Motif Atlas

Homologous match to J3_8CRE_083

Geometric discrepancy: 0.2258

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9AZM|1|S2|U|1350
9AZM|1|S2|G|1351
*
9AZM|1|S2|U|1360
9AZM|1|S2|G|1361
9AZM|1|S2|U|1362
9AZM|1|S2|C|1363
*
9AZM|1|S2|G|1375
9AZM|1|S2|A|1376
9AZM|1|S2|U|1377
9AZM|1|S2|A|1378
9AZM|1|S2|A|1379

Current chains

Chain S2

18S rRNA

Nearby chains