J3_9AZN_002

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9AZN|1|L5|C|216, 9AZN|1|L5|C|217, 9AZN|1|L5|A|218, 9AZN|1|L5|G|219, 9AZN|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|L5|C|196
9AZN|1|L5|A|197
9AZN|1|L5|A|198
9AZN|1|L5|G|199
*
9AZN|1|L5|C|215
9AZN|1|L5|C|216
9AZN|1|L5|C|217
9AZN|1|L5|A|218
9AZN|1|L5|G|219
9AZN|1|L5|C|220
9AZN|1|L5|C|221
9AZN|1|L5|C|222
9AZN|1|L5|G|223
9AZN|1|L5|U|224
9AZN|1|L5|G|225
9AZN|1|L5|G|226
9AZN|1|L5|A|227
9AZN|1|L5|C|228
*
9AZN|1|L5|G|240
9AZN|1|L5|G|241
9AZN|1|L5|U|242
9AZN|1|L5|A|243
9AZN|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26