3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG
Length
31 nucleotides
Bulged bases
9AZN|1|L5|G|959, 9AZN|1|L5|C|962, 9AZN|1|L5|G|965, 9AZN|1|L5|C|967, 9AZN|1|L5|C|968, 9AZN|1|L5|C|969, 9AZN|1|L5|U|971, 9AZN|1|L5|C|1280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9AZN|1|L5|C|712
9AZN|1|L5|C|713
*
9AZN|1|L5|G|955
9AZN|1|L5|A|956
9AZN|1|L5|G|957
9AZN|1|L5|G|958
9AZN|1|L5|G|959
9AZN|1|L5|A|960
9AZN|1|L5|G|961
9AZN|1|L5|C|962
9AZN|1|L5|G|963
9AZN|1|L5|A|964
9AZN|1|L5|G|965
9AZN|1|L5|A|966
9AZN|1|L5|C|967
9AZN|1|L5|C|968
9AZN|1|L5|C|969
9AZN|1|L5|G|970
9AZN|1|L5|U|971
9AZN|1|L5|C|972
9AZN|1|L5|G|973
9AZN|1|L5|C|974
9AZN|1|L5|C|975
9AZN|1|L5|G|976
*
9AZN|1|L5|C|1278
9AZN|1|L5|A|1279
9AZN|1|L5|C|1280
9AZN|1|L5|G|1281
9AZN|1|L5|G|1282
9AZN|1|L5|G|1283
9AZN|1|L5|G|1284

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LE
60S ribosomal protein L6 [Homo sapiens]
Chain LF
60S ribosomal protein L7
Chain Le
60S ribosomal protein L32

Coloring options:

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