J3_9B00_005

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

9B00|1|1A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B00_005 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.0577

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9B00|1|1A|C|1306
9B00|1|1A|A|1307
9B00|1|1A|A|1308
9B00|1|1A|G|1309
*
9B00|1|1A|C|1605
9B00|1|1A|G|1606
9B00|1|1A|C|1607
9B00|1|1A|A|1608
9B00|1|1A|A|1609
9B00|1|1A|A|1610
9B00|1|1A|C|1611
*
9B00|1|1A|G|1620
9B00|1|1A|U|1621
9B00|1|1A|G|1622

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34