J3_9B00_006

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B00_006 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.0532

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9B00|1|1A|U|2091
9B00|1|1A|U|2092
9B00|1|1A|G|2093
*
9B00|1|1A|C|2196
9B00|1|1A|U|2197
9B00|1|1A|A|2198
9B00|1|1A|A|2199
9B00|1|1A|C|2200
*
9B00|1|1A|G|2223
9B00|1|1A|G|2224
9B00|1|1A|A|2225
9B00|1|1A|C|2226
9B00|1|1A|A|2227
9B00|1|1A|G|2228

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1D

50S ribosomal protein L2

Chain 1I

50S ribosomal protein L9