J3_9B00_008
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9B00|1|1A|A|2518, 9B00|1|1A|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B00_008 not in the Motif Atlas
- Homologous match to J3_8VTW_008
- Geometric discrepancy: 0.0483
- The information below is about J3_8VTW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.4
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B00|1|1A|C|2517
9B00|1|1A|A|2518
9B00|1|1A|U|2519
9B00|1|1A|C|2520
*
9B00|1|1A|G|2545
9B00|1|1A|U|2546
9B00|1|1A|U|2547
*
9B00|1|1A|A|2561
9B00|1|1A|U|2562
9B00|1|1A|U|2563
9B00|1|1A|A|2564
9B00|1|1A|A|2565
9B00|1|1A|A|2566
9B00|1|1A|G|2567
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1O
- 50S ribosomal protein L14
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