J3_9B00_041

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

9B00|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B00_041 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0495

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9B00|1|1A|C|297
9B00|1|1A|G|298
9B00|1|1A|A|299
9B00|1|1A|A|300
9B00|1|1A|G|301
*
9B00|1|1A|C|316
9B00|1|1A|G|317
9B00|1|1A|C|318
9B00|1|1A|C|319
9B00|1|1A|A|320
9B00|1|1A|G|321
9B00|1|1A|A|322
9B00|1|1A|G|323
9B00|1|1A|A|324
9B00|1|1A|G|325
*
9B00|1|1A|C|337
9B00|1|1A|G|338
9B00|1|1A|U|339
9B00|1|1A|A|340
9B00|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24