J3_9B0F_012

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9B0F|1|L5|A|2396, 9B0F|1|L5|U|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0F_012 not in the Motif Atlas

Homologous match to J3_8P9A_053

Geometric discrepancy: 0.1555

The information below is about J3_8P9A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05025.1

Basepair signature

cWW-tSH-tWW-tHW-cWW-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9B0F|1|L5|C|2393
9B0F|1|L5|G|2394
9B0F|1|L5|A|2395
9B0F|1|L5|A|2396
9B0F|1|L5|G|2397
9B0F|1|L5|U|2398
9B0F|1|L5|G|2399
*
9B0F|1|L5|C|2805
9B0F|1|L5|A|2806
9B0F|1|L5|A|2807
*
9B0F|1|L5|U|2819
9B0F|1|L5|C|2820
9B0F|1|L5|U|2821
9B0F|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34