J3_9B0N_019

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9B0N|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0N_019 not in the Motif Atlas

Geometric match to J3_9DFE_014

Geometric discrepancy: 0.1402

The information below is about J3_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9B0N|1|L5|C|3937
9B0N|1|L5|G|3938
9B0N|1|L5|G|3939
*
9B0N|1|L5|C|4074
9B0N|1|L5|U|4075
9B0N|1|L5|G|4076
9B0N|1|L5|A|4077
9B0N|1|L5|C|4078
*
9B0N|1|L5|G|4168
9B0N|1|L5|G|4169
9B0N|1|L5|A|4170
9B0N|1|L5|C|4171
9B0N|1|L5|A|4172
9B0N|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15