3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
UU*AGAAG*CGUGGA
Length
13 nucleotides
Bulged bases
9B0P|1|L5|A|1805, 9B0P|1|L5|U|1834
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B0P_010 not in the Motif Atlas
Homologous match to J3_8P9A_051
Geometric discrepancy: 0.4076
The information below is about J3_8P9A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_84137.1
Basepair signature
cWW-cWW-cHW-F-cSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9B0P|1|L5|U|1726
9B0P|1|L5|U|1727
*
9B0P|1|L5|A|1802
9B0P|1|L5|G|1803
9B0P|1|L5|A|1804
9B0P|1|L5|A|1805
9B0P|1|L5|G|1806
*
9B0P|1|L5|C|1832
9B0P|1|L5|G|1833
9B0P|1|L5|U|1834
9B0P|1|L5|G|1835
9B0P|1|L5|G|1836
9B0P|1|L5|A|1837

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LF
60S ribosomal protein L7
Chain LT
60S ribosomal protein L21
Chain Lb
Large ribosomal subunit protein eL29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3492 s