3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UUGAAAAG*CG*CA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B0S_044 not in the Motif Atlas
Geometric match to J3_8P9A_046
Geometric discrepancy: 0.1108
The information below is about J3_8P9A_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_68715.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
10

Unit IDs

9B0S|1|l5|U|380
9B0S|1|l5|U|381
9B0S|1|l5|G|382
9B0S|1|l5|A|383
9B0S|1|l5|A|384
9B0S|1|l5|A|385
9B0S|1|l5|A|386
9B0S|1|l5|G|387
*
9B0S|1|l5|C|414
9B0S|1|l5|G|415
*
9B0S|1|l8|C|19
9B0S|1|l8|A|20

Current chains

Chain l5
28S rRNA [Homo sapiens]
Chain l8
5.8S rRNA [Homo sapiens]

Nearby chains

Chain lC
60S ribosomal protein L4
Chain lY
60S ribosomal protein L26
Chain ll
60S ribosomal protein L39

Coloring options:


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