J3_9B0S_045
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9B0S|1|l5|G|409, 9B0S|1|l5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B0S_045 not in the Motif Atlas
- Homologous match to J3_8CRE_006
- Geometric discrepancy: 0.2962
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9B0S|1|l5|U|380
9B0S|1|l5|U|381
9B0S|1|l5|G|382
9B0S|1|l5|A|383
9B0S|1|l5|A|384
9B0S|1|l5|A|385
9B0S|1|l5|A|386
9B0S|1|l5|G|387
9B0S|1|l5|A|388
9B0S|1|l5|A|389
9B0S|1|l5|C|390
*
9B0S|1|l5|G|401
9B0S|1|l5|A|402
9B0S|1|l5|G|403
9B0S|1|l5|U|404
9B0S|1|l5|U|405
9B0S|1|l5|C|406
9B0S|1|l5|A|407
9B0S|1|l5|A|408
9B0S|1|l5|G|409
9B0S|1|l5|A|410
9B0S|1|l5|G|411
9B0S|1|l5|G|412
9B0S|1|l5|G|413
9B0S|1|l5|C|414
9B0S|1|l5|G|415
*
9B0S|1|l8|C|19
9B0S|1|l8|A|20
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
- Chain l8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain lC
- 60S ribosomal protein L4
- Chain lP
- 60S ribosomal protein L17
- Chain lY
- 60S ribosomal protein L26
- Chain ll
- 60S ribosomal protein L39
Coloring options: