J3_9B0S_055

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

9B0S|1|l5|C|2470, 9B0S|1|l5|A|2472, 9B0S|1|l5|G|2475, 9B0S|1|l5|G|2503, 9B0S|1|l5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B0S_055 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5937

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

9B0S|1|l5|A|2451
9B0S|1|l5|G|2452
9B0S|1|l5|A|2453
9B0S|1|l5|U|2454
9B0S|1|l5|G|2455
9B0S|1|l5|G|2456
*
9B0S|1|l5|C|2465
9B0S|1|l5|G|2466
9B0S|1|l5|U|2467
9B0S|1|l5|U|2468
9B0S|1|l5|C|2469
9B0S|1|l5|C|2470
9B0S|1|l5|G|2471
9B0S|1|l5|A|2472
9B0S|1|l5|A|2473
9B0S|1|l5|G|2474
9B0S|1|l5|G|2475
9B0S|1|l5|G|2476
*
9B0S|1|l5|C|2501
9B0S|1|l5|G|2502
9B0S|1|l5|G|2503
9B0S|1|l5|C|2504
9B0S|1|l5|C|2505
9B0S|1|l5|G|2506
9B0S|1|l5|A|2507
9B0S|1|l5|U|2508

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain l8

5.8S ribosomal RNA; 5.8S rRNA

Chain lA

60S ribosomal protein L8

Chain lG

60S ribosomal protein L7a

Chain lN

60S ribosomal protein L15

Chain lX

60S ribosomal protein L23a

Chain lj

60S ribosomal protein L37