J3_9B0S_060

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC

Length

29 nucleotides

Bulged bases

9B0S|1|l5|G|4115, 9B0S|1|l5|C|4116, 9B0S|1|l5|U|4117, 9B0S|1|l5|U|4118, 9B0S|1|l5|C|4119, 9B0S|1|l5|U|4120, 9B0S|1|l5|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|l5|G|4091
9B0S|1|l5|G|4092
9B0S|1|l5|G|4093
9B0S|1|l5|G|4094
9B0S|1|l5|G|4095
9B0S|1|l5|C|4096
9B0S|1|l5|G|4097
*
9B0S|1|l5|C|4112
9B0S|1|l5|U|4113
9B0S|1|l5|C|4114
9B0S|1|l5|G|4115
9B0S|1|l5|C|4116
9B0S|1|l5|U|4117
9B0S|1|l5|U|4118
9B0S|1|l5|C|4119
9B0S|1|l5|U|4120
9B0S|1|l5|G|4121
9B0S|1|l5|G|4122
9B0S|1|l5|C|4123
9B0S|1|l5|G|4124
9B0S|1|l5|C|4125
9B0S|1|l5|C|4126
9B0S|1|l5|A|4127
9B0S|1|l5|A|4128
9B0S|1|l5|G|4129
*
9B0S|1|l5|C|4155
9B0S|1|l5|G|4156
9B0S|1|l5|A|4157
9B0S|1|l5|C|4158

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lA

60S ribosomal protein L8

Chain lG

60S ribosomal protein L7a

Chain lX

60S ribosomal protein L23a

Chain lZ

60S ribosomal protein L27

Chain lc

60S ribosomal protein L30

Chain lg

60S ribosomal protein L34

Chain lp

60S ribosomal protein L37a

Chain sB

40S ribosomal protein S3a