J3_9B0S_070
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 9B0S|1|s2|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B0S_070 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.1622
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9B0S|1|s2|U|682
9B0S|1|s2|G|683
9B0S|1|s2|G|684
*
9B0S|1|s2|U|918
9B0S|1|s2|A|919
9B0S|1|s2|A|920
9B0S|1|s2|G|921
9B0S|1|s2|A|922
*
9B0S|1|s2|U|1022
9B0S|1|s2|A|1023
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sH
- Small ribosomal subunit protein eS7
- Chain sL
- 40S ribosomal protein S11
- Chain sN
- 40S ribosomal protein S13
- Chain sW
- 40S ribosomal protein S15a
- Chain sX
- 40S ribosomal protein S23
- Chain sb
- Small ribosomal subunit protein eS27
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