J3_9B11_015

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

9B11|1|L5|C|2470, 9B11|1|L5|A|2472, 9B11|1|L5|G|2475, 9B11|1|L5|G|2503, 9B11|1|L5|C|2504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B11_015 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5938

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

9B11|1|L5|A|2451
9B11|1|L5|G|2452
9B11|1|L5|A|2453
9B11|1|L5|U|2454
9B11|1|L5|G|2455
9B11|1|L5|G|2456
*
9B11|1|L5|C|2465
9B11|1|L5|G|2466
9B11|1|L5|U|2467
9B11|1|L5|U|2468
9B11|1|L5|C|2469
9B11|1|L5|C|2470
9B11|1|L5|G|2471
9B11|1|L5|A|2472
9B11|1|L5|A|2473
9B11|1|L5|G|2474
9B11|1|L5|G|2475
9B11|1|L5|G|2476
*
9B11|1|L5|C|2501
9B11|1|L5|G|2502
9B11|1|L5|G|2503
9B11|1|L5|C|2504
9B11|1|L5|C|2505
9B11|1|L5|G|2506
9B11|1|L5|A|2507
9B11|1|L5|U|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37