3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
9B11|1|S2|A|46
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9B11_029 not in the Motif Atlas
Homologous match to J3_8CRE_072
Geometric discrepancy: 0.0686
The information below is about J3_8CRE_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9B11|1|S2|A|40
9B11|1|S2|G|41
9B11|1|S2|A|42
9B11|1|S2|U|43
9B11|1|S2|U|44
9B11|1|S2|A|45
9B11|1|S2|A|46
9B11|1|S2|G|47
*
9B11|1|S2|C|479
9B11|1|S2|G|480
9B11|1|S2|C|481
9B11|1|S2|G|482
9B11|1|S2|C|483
9B11|1|S2|A|484
9B11|1|S2|A|485
9B11|1|S2|A|486
9B11|1|S2|U|487
*
9B11|1|S2|A|512
9B11|1|S2|G|513
9B11|1|S2|U|514

Current chains

Chain S2
18S rRNA

Nearby chains

Chain CB
eEF2
Chain SJ
40S ribosomal protein S9
Chain SX
40S ribosomal protein S23

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1312 s