J3_9B24_005
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 9B24|1|A|A|957, 9B24|1|A|G|958
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_005 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.2792
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|A|A|937
9B24|1|A|U|938
9B24|1|A|U|939
9B24|1|A|A|940
9B24|1|A|A|941
9B24|1|A|U|942
9B24|1|A|U|943
9B24|1|A|C|944
*
9B24|1|A|G|955
9B24|1|A|A|956
9B24|1|A|A|957
9B24|1|A|G|958
9B24|1|A|A|959
9B24|1|A|A|960
9B24|1|A|C|961
9B24|1|A|C|962
9B24|1|A|U|963
9B24|1|A|U|964
9B24|1|A|A|965
9B24|1|A|C|966
*
9B24|1|A|G|1202
9B24|1|A|G|1203
9B24|1|A|C|1204
9B24|1|A|U|1205
9B24|1|A|U|1206
Current chains
- Chain A
- RNA (1528-MER)
Nearby chains
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14B
Coloring options: