J3_9B24_015
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 9B24|1|Y|U|69, 9B24|1|Y|A|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_015 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1791
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9B24|1|Y|A|53
9B24|1|Y|C|54
*
9B24|1|Y|G|67
9B24|1|Y|A|68
9B24|1|Y|U|69
9B24|1|Y|A|70
9B24|1|Y|A|71
9B24|1|Y|G|72
9B24|1|Y|C|73
*
9B24|1|Y|G|107
9B24|1|Y|A|108
9B24|1|Y|U|109
9B24|1|Y|G|110
9B24|1|Y|U|111
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein uL23
- Chain u
- Large ribosomal subunit protein uL29
- Chain z
- Large ribosomal subunit protein bL34
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