J3_9B24_016

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

9B24|1|Y|U|801, 9B24|1|Y|A|907, 9B24|1|Y|A|908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B24_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1527

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9B24|1|Y|U|798
9B24|1|Y|G|799
9B24|1|Y|A|800
9B24|1|Y|U|801
9B24|1|Y|C|802
9B24|1|Y|U|803
9B24|1|Y|A|804
*
9B24|1|Y|U|888
9B24|1|Y|A|889
9B24|1|Y|G|890
*
9B24|1|Y|C|906
9B24|1|Y|A|907
9B24|1|Y|A|908
9B24|1|Y|A|909

Current chains

Chain Y

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL2

Chain z

Large ribosomal subunit protein bL34