J3_9B24_017

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B24_017 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.1153

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9B24|1|Y|C|813
9B24|1|Y|A|814
9B24|1|Y|G|815
*
9B24|1|Y|C|847
9B24|1|Y|G|848
9B24|1|Y|A|849
9B24|1|Y|A|850
9B24|1|Y|C|851
*
9B24|1|Y|G|875
9B24|1|Y|A|876
9B24|1|Y|U|877
9B24|1|Y|G|878

Current chains

Chain Y

23S rRNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL2