J3_9B24_024
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GCC*GACUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9B24|1|Y|A|2612, 9B24|1|Y|A|2650
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B24_024 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1629
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|Y|G|2506
9B24|1|Y|C|2507
9B24|1|Y|C|2508
*
9B24|1|Y|G|2608
9B24|1|Y|A|2609
9B24|1|Y|C|2610
9B24|1|Y|U|2611
9B24|1|Y|A|2612
9B24|1|Y|G|2613
9B24|1|Y|U|2614
9B24|1|Y|G|2615
9B24|1|Y|A|2616
9B24|1|Y|U|2617
9B24|1|Y|C|2618
9B24|1|Y|C|2619
*
9B24|1|Y|G|2645
9B24|1|Y|C|2646
9B24|1|Y|U|2647
9B24|1|Y|C|2648
9B24|1|Y|A|2649
9B24|1|Y|A|2650
9B24|1|Y|C|2651
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL35
- Chain h
- Large ribosomal subunit protein uL15
- Chain s
- Large ribosomal subunit protein bL27
- Chain y
- Large ribosomal subunit protein bL33A
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