J3_9B24_028

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCC*GAUUGAU*AACCG

Length

15 nucleotides

Bulged bases

9B24|1|Y|U|3054, 9B24|1|Y|A|3056, 9B24|1|Y|C|3105, 9B24|1|Y|C|3106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B24|1|Y|C|3035
9B24|1|Y|C|3036
9B24|1|Y|C|3037
*
9B24|1|Y|G|3051
9B24|1|Y|A|3052
9B24|1|Y|U|3053
9B24|1|Y|U|3054
9B24|1|Y|G|3055
9B24|1|Y|A|3056
9B24|1|Y|U|3057
*
9B24|1|Y|A|3103
9B24|1|Y|A|3104
9B24|1|Y|C|3105
9B24|1|Y|C|3106
9B24|1|Y|G|3107

Current chains

Chain Y

23S rRNA

Nearby chains

Chain a

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein bL17

Chain x

Large ribosomal subunit protein bL32