J3_9B4Z_006

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9B4Z|1|AA|U|871, 9B4Z|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_006 not in the Motif Atlas

Geometric match to J3_8B0X_004

Geometric discrepancy: 0.0495

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9B4Z|1|AA|C|826
9B4Z|1|AA|U|827
9B4Z|1|AA|U|828
9B4Z|1|AA|G|829
*
9B4Z|1|AA|C|857
9B4Z|1|AA|G|858
9B4Z|1|AA|G|859
9B4Z|1|AA|A|860
9B4Z|1|AA|G|861
*
9B4Z|1|AA|C|868
9B4Z|1|AA|G|869
9B4Z|1|AA|U|870
9B4Z|1|AA|U|871
9B4Z|1|AA|A|872
9B4Z|1|AA|A|873
9B4Z|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21