J3_9B4Z_017

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

9B4Z|1|AA|U|1240, 9B4Z|1|AA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_017 not in the Motif Atlas

Geometric match to J3_8B0X_013

Geometric discrepancy: 0.1099

The information below is about J3_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

9B4Z|1|AA|C|1237
9B4Z|1|AA|A|1238
9B4Z|1|AA|A|1239
9B4Z|1|AA|U|1240
9B4Z|1|AA|G|1241
*
9B4Z|1|AA|C|1296
9B4Z|1|AA|G|1297
9B4Z|1|AA|U|1298
9B4Z|1|AA|A|1299
9B4Z|1|AA|G|1300
9B4Z|1|AA|U|1301
9B4Z|1|AA|C|1302
9B4Z|1|AA|C|1303
*
9B4Z|1|AA|G|1334
9B4Z|1|AA|U|1335
9B4Z|1|AA|C|1336
9B4Z|1|AA|G|1337

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AM

30S ribosomal protein S13