J3_9B4Z_022
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAAG*CGCGAUACAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 9B4Z|1|BA|U|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B4Z_022 not in the Motif Atlas
- Geometric match to J3_8B0X_034
- Geometric discrepancy: 0.0384
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9B4Z|1|BA|G|297
9B4Z|1|BA|G|298
9B4Z|1|BA|A|299
9B4Z|1|BA|A|300
9B4Z|1|BA|G|301
*
9B4Z|1|BA|C|316
9B4Z|1|BA|G|317
9B4Z|1|BA|C|318
9B4Z|1|BA|G|319
9B4Z|1|BA|A|320
9B4Z|1|BA|U|321
9B4Z|1|BA|A|322
9B4Z|1|BA|C|323
9B4Z|1|BA|A|324
9B4Z|1|BA|G|325
*
9B4Z|1|BA|C|337
9B4Z|1|BA|G|338
9B4Z|1|BA|U|339
9B4Z|1|BA|A|340
9B4Z|1|BA|C|341
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BU
- 50S ribosomal protein L24
Coloring options: