J3_9B4Z_023

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9B4Z|1|BA|U|686, 9B4Z|1|BA|A|792, 9B4Z|1|BA|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B4Z_023 not in the Motif Atlas

Geometric match to J3_8B0X_016

Geometric discrepancy: 0.0455

The information below is about J3_8B0X_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9B4Z|1|BA|U|683
9B4Z|1|BA|G|684
9B4Z|1|BA|A|685
9B4Z|1|BA|U|686
9B4Z|1|BA|C|687
9B4Z|1|BA|U|688
9B4Z|1|BA|A|689
*
9B4Z|1|BA|U|773
9B4Z|1|BA|G|774
9B4Z|1|BA|G|775
*
9B4Z|1|BA|C|791
9B4Z|1|BA|A|792
9B4Z|1|BA|A|793
9B4Z|1|BA|A|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2