J3_9B50_021
3D structure
- PDB id
- 9B50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9B50|1|BA|U|72, 9B50|1|BA|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9B50_021 not in the Motif Atlas
- Geometric match to J3_8B0X_015
- Geometric discrepancy: 0.0512
- The information below is about J3_8B0X_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9B50|1|BA|A|56
9B50|1|BA|C|57
*
9B50|1|BA|G|70
9B50|1|BA|A|71
9B50|1|BA|U|72
9B50|1|BA|A|73
9B50|1|BA|A|74
9B50|1|BA|G|75
9B50|1|BA|C|76
*
9B50|1|BA|G|110
9B50|1|BA|A|111
9B50|1|BA|U|112
9B50|1|BA|U|113
9B50|1|BA|U|114
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain BT
- 50S ribosomal protein L23
- Chain BY
- 50S ribosomal protein L29
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