J3_9B51_006

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9B51|1|AA|U|871, 9B51|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B51_006 not in the Motif Atlas

Geometric match to J3_8B0X_004

Geometric discrepancy: 0.0439

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

9B51|1|AA|C|826
9B51|1|AA|U|827
9B51|1|AA|U|828
9B51|1|AA|G|829
*
9B51|1|AA|C|857
9B51|1|AA|G|858
9B51|1|AA|G|859
9B51|1|AA|A|860
9B51|1|AA|G|861
*
9B51|1|AA|C|868
9B51|1|AA|G|869
9B51|1|AA|U|870
9B51|1|AA|U|871
9B51|1|AA|A|872
9B51|1|AA|A|873
9B51|1|AA|G|874

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8

Chain AU

30S ribosomal protein S21