J3_9B51_022

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9B51|1|BA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B51_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0444

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9B51|1|BA|G|297
9B51|1|BA|G|298
9B51|1|BA|A|299
9B51|1|BA|A|300
9B51|1|BA|G|301
*
9B51|1|BA|C|316
9B51|1|BA|G|317
9B51|1|BA|C|318
9B51|1|BA|G|319
9B51|1|BA|A|320
9B51|1|BA|U|321
9B51|1|BA|A|322
9B51|1|BA|C|323
9B51|1|BA|A|324
9B51|1|BA|G|325
*
9B51|1|BA|C|337
9B51|1|BA|G|338
9B51|1|BA|U|339
9B51|1|BA|A|340
9B51|1|BA|C|341

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24