J3_9BDL_010
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9BDL|1|A18S|U|1535, 9BDL|1|A18S|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDL_010 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.1671
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDL|1|A18S|C|1532
9BDL|1|A18S|A|1533
9BDL|1|A18S|C|1534
9BDL|1|A18S|U|1535
9BDL|1|A18S|G|1536
*
9BDL|1|A18S|C|1597
9BDL|1|A18S|G|1598
9BDL|1|A18S|U|1599
9BDL|1|A18S|G|1600
9BDL|1|A18S|A|1601
9BDL|1|A18S|U|1602
9BDL|1|A18S|G|1603
9BDL|1|A18S|G|1604
*
9BDL|1|A18S|C|1635
9BDL|1|A18S|G|1636
9BDL|1|A18S|A|1637
9BDL|1|A18S|G|1638
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS05
- Ribosomal protein S5
- Chain AS18
- 40S ribosomal protein S18
- Chain AS19
- Small ribosomal subunit protein eS19
- Chain AS25
- 40S ribosomal protein S25
Coloring options: