J3_9BDL_011

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9BDL|1|A28S|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|C|112
9BDL|1|A28S|A|113
9BDL|1|A28S|G|114
9BDL|1|A28S|C|115
9BDL|1|A28S|G|116
*
9BDL|1|A28S|C|155
9BDL|1|A28S|G|156
9BDL|1|A28S|U|157
9BDL|1|A28S|A|158
9BDL|1|A28S|C|159
9BDL|1|A28S|G|160
*
9BDL|1|A28S|C|275
9BDL|1|A28S|C|276
9BDL|1|A28S|G|277
9BDL|1|A28S|G|278

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL08

Large ribosomal subunit protein eL8

Chain AL13

Large ribosomal subunit protein eL13

Chain AL15

60S ribosomal protein L15

Chain AL35

60S ribosomal protein L35

Chain AL36

60S ribosomal protein L36