J3_9BDL_015

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

9BDL|1|A28S|A|1998

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_015 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.5827

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

9BDL|1|A28S|G|1969
9BDL|1|A28S|A|1970
9BDL|1|A28S|U|1971
9BDL|1|A28S|G|1972
*
9BDL|1|A28S|C|1994
9BDL|1|A28S|G|1995
9BDL|1|A28S|C|1996
9BDL|1|A28S|U|1997
9BDL|1|A28S|A|1998
9BDL|1|A28S|A|1999
9BDL|1|A28S|G|2000
9BDL|1|A28S|G|2001
*
9BDL|1|A28S|C|2016
9BDL|1|A28S|A|2017
9BDL|1|A28S|C|2018

Current chains

Chain A28S

28S rRNA

Nearby chains