J3_9BDL_025

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9BDL|1|A18S|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_025 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0649

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BDL|1|A18S|A|40
9BDL|1|A18S|G|41
9BDL|1|A18S|A|42
9BDL|1|A18S|U|43
9BDL|1|A18S|U|44
9BDL|1|A18S|A|45
9BDL|1|A18S|A|46
9BDL|1|A18S|G|47
*
9BDL|1|A18S|C|479
9BDL|1|A18S|G|480
9BDL|1|A18S|C|481
9BDL|1|A18S|G|482
9BDL|1|A18S|C|483
9BDL|1|A18S|A|484
9BDL|1|A18S|A|485
9BDL|1|A18S|A|486
9BDL|1|A18S|U|487
*
9BDL|1|A18S|A|512
9BDL|1|A18S|G|513
9BDL|1|A18S|U|514

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23